Data

  • Test BAM, pBAM and diff files can be found here.
  • NA12878 pBAM files can be found here.
  • 10x Single-cell analysis on BAM and pBAM (outputs of the pipelines and Jupyter notebook) can be found here.
  • You can find some larger pBAM files here.
  • RNA-Seq cohort was taken from gEUVADIS project.
  • We generated 2 RNA-Seq and 12 surreptitiously sequenced low-coverage and high-coverage blood tissue DNA datasets.
  • For linking attacks we used the 1000 Genomes Project phase 3 genomes for the gold-standard genomes.
    • We also generated panels with different composition of ancestries and pedigrees based on the 1000 Genomes individuals. 
  • Functional genomics data are largely obtained from ENCODE data portal. 
  • Hi-C data is from Rao et al., 2014, Cell paper.